Journal of Threatened Taxa | www.threatenedtaxa.org
| 26 March 2018 | 10(3): 11464–11469
First record of fungus Cryptomarasmius T.S. Jenkinson
& Desjardin (Physalacriaceae: Agaricales:
Basidiomycota) from India
Arun Kumar Dutta
1 & Krishnendu Acharya 2
1,2 Molecular and
Applied Mycology and Plant Pathology Laboratory, Department of Botany,
University of Calcutta, Kolkata, West Bengal 700019, India
1 arun.botany@gmail.com,
2 krish_paper@yahoo.com (corresponding author)
Abstract:
The saprophytic fungus genus Cryptomarasmius has 28
reported species worldwide. We
report here the first record of Cryptomarasmius exustoides in India, extending the distribution of
Cryptomarasmius. A detailed taxonomic description with
illustrations, and phylogenetic analysis with related species are provided.
Keywords: Fungus,
Internal transcribed spacer sequence, new record, nuclear ribosomal large
subunit, phylogeny, taxonomy.
doi: http://doi.org/10.11609/jott.3704.10.3.11464-11469
Editor: V.B. Hosagoudar, Bilagi, Bagalkot,
India. Date of publication: 26 March 2018 (online & print)
Manuscript details: Ms # 3704 | Received 28 July 2017 | Final received 05 January 2018 |
Finally accepted 22 February 2018
Citation: Dutta,
A.K. & K. Acharya (2018). First record of fungus Cryptomarasmius T.S. Jenkinson
& Desjardin (Physalacriaceae: Agaricales:
Basidiomycota) from India. Journal of Threatened Taxa 10(3): 11464–11469; http://doi.org/10.11609/jott.3704.10.3.11464-11469
Copyright: © Dutta & Acharya 2018. Creative Commons Attribution 4.0 International
License. JoTT allows unrestricted use of this
article in any medium, reproduction and distribution by providing adequate
credit to the authors and the source of publication.
Funding: None.
Competing interests: The authors declare no competing interests.
The
genus Cryptomarasmius (Agaricales, Basidiomycota) was proposed by Thomas S. Jenkinson & Dennis E. Desjardin (2014) by treating Marasmius hygrometricus (V. Brig.) Sacc. as the type species.
Historically, all species belonging to this genus were classified as Marasmius under section Hygrometrici (KŸhner), having a combination of marasmioid
stature, a smaller pileus that is well-pigmented and
broom cells mostly of the Rotalis-type or
often in a combination with smooth cells, free to adnate
attachment of lamellae, absence of collarium, a
central and insititious stipe, usually presence of pleuro- and cheilocystidia,
neither amyloid or dextrinoid nature of the pileus, lamellae or stipe trama,
and medium-sized basidiospores (Singer 1976).
Phylogenetic
approach based on molecular sequence data (nrDNA ITS)
including the member of the sect. Hygrometrici was previously attempted by Tan et al. (2009) where four
included sequences of Cryptomarasmius micraster (Petch) T.S. Jenkinson & Desjardin (then as Marasmius micraster Petch) clustered together
within the clade containing species belonging to the gen. Marasmius sects. Marasmius and Sicciformes with no statistical support. Later, in the
phylogenetic analysis performed by Jenkinson et al.
(2014), four previously known member of the family Hygrometrici
(viz. Marasmius corbariensis
(Roum.) Sacc., M. exustoides Desjardin &
E. Horak, M. micraster and
M. thwaitesii Berk. &
Broome) formed a clade together with the well-known representatives of the
family Physalacriaceae Corner with low statistical
support (BPP 0.81, BS 61%). In the
said phylogenetic analysis (Jenkinson et al. 2014),
the four taxa were found to form a sister lineage within a clade containing
other genera like Cylindrobasidium JŸlich, Physalacria
Peck, and Rhodotus
Maire with moderate to weak statistical support (BPP
0.76, BS <50%). From the overall
study (Jenkinson et al. 2014), based on the nuclear
ribosomal large subunit sequence data (LSU), insisted Jenkinson
and his group to transfer the previously accepted members of the Marasmius sect. Hygrometrici (family Marasmiaceae) to a new genus Cryptomarasmius
within the family Physalacriaceae.
Reports on the
taxa belonging to the gen. Cryptomarasmius
are found in the literature under the name Marasmius (sect. Hygrometrici). Singer (1976) reported five species of Cryptomarasmius in his monographic study ÔMarasmiae
(Basidiomycetes - Tricholomataceae)Õ
based on the collections made from several regions (viz. Argentina, Bolivia,
Ecuador, Florida, Hawaii, Mexico, and Venezuela) accompanying with variable
climatic conditions. Petrini et al. (1997) reported quite a number of Cryptomarasmius species from Papua New Guinea, New Caledonia, and New
Zealand in the name of Marasmius
under sect. Hygrometrici. Anton’n et al.
(2012) reported two species from Republic of Korea, among which Marasmius crescentiae (presently Cryptomarasmius crescentiae) was a new record from the region and Marasmius junipericola (presently Cryptomarasmius junipericola) represented a newly described species. Among the southern African region,
Pegler (1982) newly described a taxon (Marasmius parviconicus Pegler) belonging to the sect. Hygrometrici
based on his collection from Copperbelt Province of
Zambia.
Considerably
little works had been carried out on this group from south Asian regions. Pegler (1986) reported two species (M.
micraster and M. thwaitesii)
from Sri Lanka. Other than that, the presence of the fungi belonging to the
group is scarce in literatures. The
present paper deals with the new record of Cryptomarasmius exustoides from India. This paper represents the first distributional
record of the genus in the Indian context.
The specimen under consideration was collected during July 2014 from
Kolkata, West Bengal, India. The material was photographed in the field using a
digital camera and extensive notes on the basidiomata
were done before drying. Colour terms follow Kornerup
& Wanscher (1978). Microscopic features were obtained from
free-hand sections of the dried basidiocarp tissues
in 5% KOH, MelzerÕs reagent and Congo Red. Basidiospores size are provided as
a mean value (underlined); values in parentheses indicate minimum or maximum
measured values. Q value denotes
length/width ratio of the basidiospores. The voucher specimen has been deposited
in the Calcutta University Herbarium (CUH) with the accession number CUH AM127.
The extraction of genomic DNA as well as PCR protocol for the
amplification of nrDNA regions (nrITS
and nrLSU) follows Dutta et
al. (2015). PCR products were
purified using QIAquick¨ Gel Extraction Kit (QIAGEN,
Germany) and used for automated DNA sequencing on ABI3730xl DNA Analyzer (Applied Biosystems,
USA) using primers identical with amplification for nrDNA
regions (Vilgalys & Hester 1990; Gardes & Bruns 1993). The generated sequences were edited
manually using BioEdit sequence alignment editor
version 7.0.9.0 (Tom Hall, Ibis Biosciences, Carlsbad, USA).
The newly generated ITS and LSU sequences were 732 bp
and 588 bp respectively. Both the sequences were then used for
BLAST searches in the GenBank nucleotide database.
The newly generated sequences and those retrieved from GenBank
based on a BLAST search (Table 1) were chosen for conducting phylogenetic
analysis. Representative taxa [viz. Marasmius rotula (Scop.) Fr.
and M. rotalis
Berk. & Broome] of the family Marasmiaceae, clearly
outside the family Physalacriaceae (fide Jenkinson et al. 2014), were used for rooting purposes.
Datasets consisting of 23 sequences for each gene (ITS and nrLSU) were aligned using MUSCLE (Edgar 2004), with
additional manual adjustments to the alignment performed in MEGA v.7.0 (Kumar
et al. 2016). The ends of the data
sets were trimmed to 808 bp (ITS) and 558 bp (nrLSU) respectively. Finally,
a combined dataset consisting of the two regions (ITS + nrLSU)
was created in MEGA v.7.0 (Kumar et al. 2016). The appropriate model of sequence
evolution for phylogenetic analysis (GTR+I+G with BIC of 18916.726890) was
determined using jModeltest 2.1.6 v20140903 (Darriba et al. 2012) in the CIPRES web portal (Miller et
al. 2009). Maximum likelihood (ML)
analysis was performed with RAxMLÂ 8.2.9 (Stamatakis 2014) on the CIPRES NSF XSEDE resource. Bayesian phylogenetic analysis was done
in MrBayes v. 3.2.1 (Ronquist
et al. 2012) by employing general time reversible (GTR) model with
gamma-distributed substitution rates. Markov chains were run for 105
generations, saving a tree every 100th generation.
Table
1. Fungal species and GenBank accession number for
the sequences used in the phylogenetic analysis. Bold font represents the newly
sequenced specimen.
Name
of taxa |
Voucher
no. |
GenBank accession no. |
Country |
|
ITS |
LSU |
|||
Cryptomarasmius
exustoides |
CUH
AM127 |
MF189078 |
MF495890 |
India |
Cryptomarasmius exustoides |
DED6249 |
JN601434 |
JN585129 |
USA: Hawaii |
Cryptomarasmius micraster |
DED7647 |
FJ431261 |
JN585131 |
Malaysia |
Cryptomarasmius micraster |
PDD:95297 |
KM975400 |
KM975386 |
New Zealand |
Cryptomarasmius thwaitesii |
DED5918 |
JN601437 |
JN585132 |
USA: Hawaii |
Cryptomarasmius corbariensis |
Ngyuen111209 |
JN601433 |
JN585128 |
USA:
California |
Cryptomarasmius crescentiae |
LE295992 |
KF774149 |
KF896252 |
Russia |
Cryptomarasmius crescentiae |
LE295993 |
KF774147 |
KF896251 |
Russia |
Cryptomarasmius aukubae |
– |
AB512314 |
AB512377 |
Japan:Okinawa |
Physalacriacryptomeriae |
NY: Clark T
Rogerson |
KT201655 |
KT201639 |
USA: New
York |
Physalacriasinensis |
HKAS:77294 |
KT201643 |
KT201638 |
China:
Kunming |
Physalacriabambusae |
CBS712.83 |
DQ097367 |
DQ097349 |
Japan |
Physalacriamaipoensis |
2373Inderbitzin |
DQ097368 |
AF426959 |
Thailand |
Flammulinayunnanensis |
HKAS 32774 |
DQ486704 |
DQ457667 |
China |
Flammulinavelutipes |
TENN 52002 |
AY854073 |
NG_027630 |
USA |
Rhizomarasmius pyrrocephalus |
TENN51091 |
DQ097369 |
DQ097351 |
USA |
Rhizomarasmius oreinus |
BRNM 751553 |
KM588669 |
KM588689 |
Italy |
Rhizomarasmius oreinus |
BRNM 751554 |
KM588670 |
KM588690 |
Italy |
Omphalotusolearius |
CBS 141.34 |
– |
AF042010 |
Germany |
Omphalotusolearius |
CBS33285 |
AF525061 |
– |
Austria |
Omphalotusnidiformis |
CBS 323.49 |
EU424307 |
EU365662 |
China |
Omphalotusilludens |
BR1830367 |
AF525047 |
– |
– |
Cryptomarasmius exustoides
(Desjardin & E. Horak) T.S. Jenkinson & Desjardin
Mycologia
106(1): 92 (2014)
(Image 1; Fig.
1)
Specimen
examined: AKD 209/2014 (CUH AM127), 22.vii.2014, India: West Bengal, Kolkata,
botanical garden of Ballygunge Science college
campus, 22.619166670N & 88.485555560E, 14m elevation,
coll. A.K. Dutta & S. Paloi.
Pileus 1‒4 mm diam, convex,
often with a small central depression, nonpapillate,
plicate, surface dry, glabrous, initially light brown (6D5) to brown (6D7-8)
overall, turns yellowish-white (1-2A2) to yellowish grey (2-3B2) or pale orange
(5A3) to light orange (5A4) towards margin with light brown (6D6) to brown
(6D7-8, 7F4-5) center due to heavy rain, hygrophanous. Context very thin,
cream. Lamellae ²1 mm broad, non-collariate, adnexed, distant (6–7) with 0-1 series of lamellulae, white, concolorous,
even. Stipe 5‒14 mm long, thin (<0.5mm), central, cylindrical, wiry,
equal, surface brown (7F5) to dark brown (7F6), smooth, insititious.
Rhizomorphs absent. Odour and taste not distinctive.
Basidiospores (9‒)10‒10.2‒10.5(‒11)
× 4‒5‒5.3(‒6) µm, Q=1.6‒1.9‒2.3 µm,
ellipsoid to obovoid, slightly curved in profile,
smooth, hyaline, inamyloid, thin-walled. Basidia 20‒22(‒25) ×
7‒7.5(‒9) µm, clavate, hyaline,
thin-walled, 4-spored; sterigmata
1.5‒2.5(‒3.5) µm long, cylindrical. Lamellae edge sterile, with
crowded cystidia. Cheilocystidia
common, dimorphic: a) Rotalis-type broom
cells with mainbody 12‒13.5(‒15) ×
4.5‒5.5(‒7) µm, clavate, hyaline,
thin-walled; apical setulae 0.5‒2 µm long,
cylindrical, pale yellow to light brownish with KOH, obtuse, thick-walled, b) fusoid, measuring 24‒28(‒35) ×
3.5‒5(‒7) µm, with capitate to sub-capitate apex, hyaline, thin-walled. Pleurocystidia
absent. Pileipellis
a hymeniform layer, composed of Rotalis-type of broom cells; main-body (10‒)14‒17(‒18) ×
(7‒)8.5‒10(‒11.5) µm, cylindrical to clavate,
hyaline to pale yellow, thin- to thick-walled; apical setulae
(0.7‒)1‒1.5(‒2) µm long, cylindrical, pale yellow to light
brownish with KOH, thick-walled. Pileosclerocystidia
31‒37 × 5‒6.5(‒7.5) µm, clavate,
resinous incrustations present, pale yellow to light brown. Pileus trama hyphae 3‒5 µm broad, interwoven, cylindrical,
hyaline, inamyloid, wall up to 0.5 µm thick. Lamellae trama hyphae 3.5‒4.5 µm broad, interwoven,
cylindrical, hyaline, inamyloid, thin-walled. Stipitipellis
hyphae 2.5‒3.5 µm broad, parallel to subparallel,
cylindrical, hyaline, inamyloid, thin-walled.
Stipe trama hyphae 3‒4(‒5.5) µm broad,
more or less parallel, cylindrical, hyaline, inamyloid,
smooth, thin-walled. Caulocystidia absent. Clamp-connections present in all the tissues.
Habit and
habitat: Solitary or in clusters on rotting bark or wood sticks.
Remarks: The
characteristic features of Cryptomarasmius exustoides includes a small, plicate pileus
coloured light brown to brown at disc with
yellowish-white to pale orange or light orange margin; distant (6‒7),
non-collariate lamellae; an insititious
stipe coloured brown to dark brown; absence of rhizomorphs; ellipsoid basidiospores
measuring 9‒11 × 4‒6 µm; presence of dimorphic cheilocystidia i.e. fusoid with capitate to sub-capitate apex and
combination with Rotalis-type cells;
clavate pileosclerocystdia
measuring 31‒37 × 5‒7.5 µm; and absence of pleurocystidia and caulocystidia.
The features of our Indian collection match nicely with that of the type
specimen description, except having a bit smaller length of the stipes (5‒14 mm vs
10‒25 mm; Desjardin & Horak 1997).
Previously there were reports on the occurrences of the species from New
Zealand (Desjardin & Horak 1997) and Hawaii
(USA). The present work constitutes
the first report of this taxon from India.
Among
phenotypically similar taxa: Cryptomarasmius crescentiae (Murrill) T.S. Jenkinson & Desjardin, originally described from Cuba
and later subsequently reported from South America and Papua New Guinea, have ochraceous to ochraceous brown pileus with deep ochraceous brown
center, presence of more number of lamellae (7‒10), and much smaller (6.5
× 2.7 µm), oblong basidiospores (Singer
1976). Marasmius exustus Berk. & M.A. Curtis, originally described from the Bonin
Islands, primarily differs in having much smaller basidiospores
(6.5‒8.0 × 4‒5 µm), and absence of pileosclerocystidia
on the pileus surface (Berkeley & Curtis 1868). Cryptomarasmius minutus (Peck) T.S. Jenkinson &
Desjardin differs in having considerably smaller basidiospores
(6.0‒9.5 × 3‒4 µm) and presence of abundant fusiform to lageniform pleurocystidia and pileoleptocystidia.
Among phylogenetically related most close taxa (Fig. 2), Cryptomarasmius micraster (Petch) T.S. Jenkinson & Desjardin, described for the first time
from Sri Lanka (Petch 1948) and later reported from
Malaya and New Zealand, has rusty brown to pale soot brown pileus
with darker center, subdistant
(9‒12), discolorous
lamellae with pale rusty brown to pale brown edges, much longer stipes (up to 75mm), and presence of considerably larger Rotalis-type cheilocystidia (12‒30 × 8‒15 µm; Desjardin
& Horak 1997).
Phylogenetic analyses were performed on combined dataset (ITS plus nrLSU) of 23 sequences representing six genera viz. Cryptomarasmius (nine sequences), Rhizomarasmius (three
sequences), Flammulina (two
sequences), Physalacria (four sequences),
Omphalotus (three
sequences) and Marasmius (two
sequences) of which taxa belonging to the gen. Marasmius was used as
an outgroup for rooting purposes. The ML analysis resulted the
phylogenetic tree (-lnL =
9264.444470) that did not differ significantly in topology from the tree
obtained from Bayesian analyses. Bayesian analyses reached a standard deviation
of split frequencies of 0.005 after 1,000,00 generations, and the initial 25%
trees recovered were excluded as the burn-in. Maximum likelihood bootstrap values (BS)
and Bayesian posterior probabilities (PP) support the deeper nodes as well as
the terminal nodes with moderate to strong support (Fig. 2).
The phylogenetic analyses clustered all of the members belonging to the
family Physalacriaceae within a strongly supported
clade (100% BS, 1.00 PP) where nine sequences representing six species of the
genus Cryptomarasmius was found to
monophyletic with strong support values (97% BS, 1.00 PP). In the resulted phylogenetic analysis,
the acquired sequence of Cryptomarasmius aukubae was found to cluster with the deposited two Russian
sequences of Cryptomarasmius crescentiae with full support values (100% BS, 1.00
PP) that could be attributed to the misidentification for the deposited
sequence of Cryptomarasmius aukubae in GenBank database. The Indian collection of Cryptomarasmius exustoides
cluster with the sequence of the same taxon earlier reported from USA with
significant support values (92% BS, 1.00 PP).
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